In thiis page, you can see Jose’s work is guided by the 3E’s approach: Entrepreneurship, Engineering, and Education. By blending innovative engineering with entrepreneurial thinking, he develops solutions that are both technically sound and socially impactful. At the same time, he emphasizes education as a driver of accessibility and empowerment, ensuring that research and design benefit not just technology, but the communities they serve.
Table of Contents
Jose Armando setting up the stained histology cell for the BME-0156: Biophotonics Laboratory as the Laboratory and Course Assistant (January 2026).
Special Appreciation to the following mentors throughout the years:
Sehba Hasan
Ethan Danahy, Ph.D.
Lauren D. Black III, Ph.D.
Brian Timko, Ph.D.
Moneer Azzam
Maria Savvidou, Ph.D.
Jonathan Zhang, Ph.D.
Nisha Iyer, Ph.D.
Angelia Lai, Ph.D.
Sergio Fantini, Ph.D.
Srivalleesha Malidi, Ph.D.
September 2025 - June 2026
Department of Biomedical Engineering, Tufts University
Advising from Sergio Fantini, Ph.D.
Sara Rochdi, E'26; Jean Park, E'26, Jose Rodriguez Sanchez, E'26; Jodee Frias, EG'4G, and Sergio Fantini, Ph.D.
Frequency-domain near-infrared spectroscopy (FD-NIRS) measures cerebral hemodynamics using intensity and phase signals, but performance is often limited by motion artifacts and inconsistent optode-scalp contact. A modular FD-NIRS headset was developed with a flexible 3D-printed frame, a rod-to-hole attachment mechanism, and foam padding to improve mechanical stability, light shielding, and user comfort. Performance was evaluated using phantom testing, motion-based displacement analysis, comfort assessments with a VAS (Visual Analog Scale), and in-vivo cuff-induced oscillations. In phantom conditions, the capstone module achieved significantly higher signal-to-noise ratio with comparable phase noise relative to the DOIT system. Motion testing showed average maximum module displacement below 1 mm across trials, indicating stable module-headframe coupling. Comfort testing showed consistently lower discomfort scores for the capstone headset. In vivo results showed wavelength-dependent signal-to-noise differences but consistently reduced phase noise, indicating improved signal stability. Dual-slope measurements improved overall signal stability. These results demonstrate that improved mechanical integration enhances stability, comfort, and phase reliability, supporting more consistent FD-NIRS measurements in vivo.
June - August 2025
BME-0006, Tufts Unviersity
Jose Armando, E'26
This project introduces INSIGHT (INsulin SImulation Glucose Homeostasis Tool), a MATLAB-based model designed to explore the physiological dynamics of glucose and insulin during meal ingestion and subcutaneous insulin delivery. INSIGHT builds on the classical Bergman minimal model by incorporating two additional subsystems: subcutaneous insulin absorption, represented through depot and transit compartments, and gut glucose appearance, modeled as a two-stage emptying process. These extensions allow the simulator to capture clinically relevant delays between insulin injection, its appearance in plasma, and its eventual metabolic effect, as well as the gradual rise of plasma glucose following a carbohydrate meal.
The tool enables users to specify meal size, insulin bolus timing and dose, and basal infusion rates to generate customized simulations of postprandial glucose profiles. Using MATLAB’s ODE45 solver, INSIGHT computes plasma glucose, insulin concentrations, insulin effect, and appearance rates, providing outputs as time-series plots and key summary metrics such as minimum, maximum, and final glucose levels. Results demonstrate the importance of timing and dose in minimizing glucose excursions, with pre-meal bolusing and basal infusion both reducing postprandial peaks. As an educational platform, INSIGHT offers a clear and interactive framework for understanding glucose–insulin homeostasis and for illustrating the principles of diabetes management.
January - May 2025
BME-0006, Tufts Unviersity
Advising from Nisha Iyer, Ph.D.
Jose Armando, E'26
Advancements in prosthetic technology significantly improve mobility and independence for individuals with limb loss. Traditional prosthetic devices, while functional, often lack the adaptability and sensory feedback necessary for seamless integration into daily life. Smart materials, including shape memory alloys, piezoelectric materials, and nanostructured composites, emerge as transformative solutions in prosthetic engineering. These materials enable enhanced proprioception, real-time adaptability, and increased durability, bridging the gap between artificial limbs and biological systems.
This review examines the applications of smart materials in prosthetic interfaces, emphasizing their role in sensory enhancement, adaptive control, and biomechanical integration. Case studies, such as neural-controlled prosthetics and advanced haptic feedback systems, demonstrate the effectiveness of these innovations in restoring natural movement and tactile perception. Despite these advancements, challenges remain in manufacturing scalability, material durability, and cost accessibility. The integration of Industry 4.0 technologies, including AI-driven control systems and 3D printing, offers potential solutions to reduce costs and improve accessibility.
By examining both technological advancements and barriers to widespread adoption, this review highlights the potential of smart materials to redefine prosthetic functionality. Future research and interdisciplinary collaboration in material science, bioengineering, and neuroscience are essential in overcoming current limitations and making next-generation prosthetics more intuitive, affordable, and widely available.
Kyona Schacht, AG’25; Jose Rodriguez Sanchez, E'26; and Malika Zakarina, EG’1G
I looked into the fundamentals and applications of Photoacoustic Imaging (PAI), an emerging biomedical imaging technique that combines the high optical contrast of light-based imaging with the deep tissue penetration of ultrasound. This hybrid modality is increasingly valuable for non-invasive molecular imaging, with potential applications in cancer detection, vascular diagnostics, and tissue characterization.
The lab was divided into two components: MATLAB-based signal processing and experimental imaging using the Vevo LAZR system. In the computational module, I worked with raw radiofrequency (RF) data from both ultrasound and photoacoustic sources. Using digital signal processing techniques such as Fast Fourier Transforms, I analyzed the frequency characteristics of a 25 MHz transducer, while Hilbert transforms were applied to create envelope-detected images that mimic conventional B-mode ultrasound. This portion of the lab provided essential experience in signal interpretation and image reconstruction techniques crucial for biomedical imaging systems.
In the experimental portion, I conducted real-time imaging of tissue-mimicking phantoms containing indocyanine green (ICG) dye and hemoglobin. Spectral analysis confirmed strong photoacoustic signals from ICG near 800 nm, with maximum intensity achieved when the sample was aligned within both the optical and acoustic focal planes. I also observed photobleaching, as prolonged laser exposure led to a gradual decrease in ICG signal strength. Additionally, using multi-wavelength excitation and spectral unmixing, I was able to distinguish between oxygenated and deoxygenated hemoglobin, highlighting PAI’s ability to perform functional imaging based on blood oxygenation levels.
This project strengthened my technical skills in signal processing, imaging system operation, and data interpretation, while also deepening my appreciation for the interdisciplinary nature of biomedical engineering. It underscored the power of combining theory with hands-on experimentation to drive innovation in medical imaging technology.
Kyona Schacht, AG’25; Jose Rodriguez Sanchez, E'26; and Malika Zakarina, EG’1G
As part of a recent lab project, we explored the use of frequency-domain near-infrared spectroscopy (FD-NIRS) to characterize the optical properties of a diffuse optical phantom, simulating tissue-like scattering and absorption behavior. This work aimed to validate a multi-distance scanning configuration for accurately recovering absorption (μₐ) and reduced scattering (μ’s) coefficients across two near-infrared wavelengths (690 nm and 830 nm), relevant to biomedical optical imaging.
We implemented a linear slope method to retrieve optical properties by analyzing the amplitude (AC) and phase of diffuse reflectance measurements as a function of source-detector distance. These measurements were then linearized, and the resulting slope values were used to extract absolute optical properties. Absorption coefficients were found to be higher at 830 nm (μₐ ≈ 0.00110 mm⁻¹) compared to 690 nm (μₐ ≈ 0.00074 mm⁻¹), consistent with typical hemoglobin absorption behavior. Conversely, scattering coefficients were higher at 690 nm (μ’s ≈ 0.4914 mm⁻¹) than at 830 nm (μ’s ≈ 0.3529 mm⁻¹), reflecting expected wavelength-dependent tissue scattering trends.
All data analysis, modeling, and visualization were performed using custom MATLAB scripts, which processed raw measurement data to generate linear fits, extract optical parameters, and visualize diffuse reflectance. This workflow not only validated the FD-NIRS approach for optical property quantification but also provided hands-on experience in signal processing, light-tissue interaction modeling, and computational data analysis.
This project deepened my understanding of optical imaging physics, spectroscopy, and the practical application of computational tools for biomedical research. It demonstrates the potential of FD-NIRS as a non-invasive technique for probing tissue structure and function, with applications in medical diagnostics and tissue monitoring.
Kyona Schacht, AG’25; Jose Rodriguez Sanchez, E'26; and Malika Zakarina, EG’1G
Completed a research project for BME-0156: Biophotonics Laboratory at Tufts University under the supervision of Maria Savvidou, Ph.D., in collaboration with Kyona Schacht, EG’25, and Malika Zakarina, EG’1G. This study focused on a comparative analysis of confocal and two-photon microscopy for depth-resolved imaging of biological samples, including YG Invitrogen fluorescent beads, Convallaria rhizome, and Triple-Negative Breast Cancer (TNBC) cells embedded in a collagen matrix.
We investigated the lateral and axial resolution of confocal microscopy using 0.5 μm fluorescent beads and evaluated the impact of pinhole size on resolution. A 3D reconstruction of Convallaria tissue was performed to assess optical sectioning capability. Using two-photon microscopy, we analyzed the optical redox ratio of TNBC cells to assess metabolic activity, and compared it to confocal results. Additionally, we examined depth penetration using continuous wave (CW) and pulsed lasers by calculating Signal-to-Background Ratios (SBR).
Key findings showed that 1 Airy Unit (AU) provided the most accurate lateral resolution, while increasing imaging depth led to reduced contrast in plant tissue due to scattering and absorption. Contrary to expectations, two-photon imaging did not outperform confocal in deeper imaging under our experimental conditions.
Skills developed include advanced microscopy (confocal & two-photon), 3D image reconstruction, quantitative image analysis, optical resolution and SBR calculation, and data visualization using MATLAB. The project also enhanced abilities in scientific communication, technical collaboration, and experimental design in biomedical optics.
Kyona Schacht, AG’25; Jose Rodriguez Sanchez, E'26; and Malika Zakarina, EG’1G
This research laboratory paper was completed for BME-0156: Biophotonics Laboratory at Tufts University under the supervision of Maria Savvidou, Ph.D., and in collaboration with Kyona Schacht, AG’25, and Malika Zakarina, EG’1G. Our objective was to compare brightfield, phase contrast, and fluorescence microscopy in imaging biological samples, with a focus on assessing their respective advantages and limitations in contrast generation, resolution, and visualization.
We examined stained histology slides, live GFP+ and RFP+ cells, Convallaria rhizome, and 0.5 μm fluorescent beads. Brightfield microscopy provided strong contrast for stained samples but lacked effectiveness for unstained specimens. Phase contrast microscopy enhanced visualization of live, transparent cells by detecting refractive index differences, making it especially useful for imaging GFP+ and RFP+ cells. Fluorescence microscopy enabled specific imaging of cellular structures using targeted fluorophores, including DAPI for nuclei, GFP for protein fluorescence, and TRITC as a vascular or cell wall marker. However, interpreting composite fluorescence images required caution; overlapping signals sometimes obscured features, such as green fluorescence masking red emission in Figure 7f.
We also observed unexpected variations in bead size measurements at 40x magnification, likely due to focus-related limitations. Overall, our findings emphasize the trade-offs of each technique: brightfield excels with stained specimens, phase contrast enhances unstained cell visibility but can introduce halo artifacts, and fluorescence microscopy offers molecular specificity while requiring careful staining and attention to photobleaching and signal overlap. This project reinforced the importance of selecting the appropriate microscopy method based on the biological sample and research objective.
Massachusetts Governor Maura Healey
On October 25, 2024, I opened my mailbox to something that I did not expect: a letter from the Governor of Massachusetts, Maura Healey. Co-signed with recognition from Lt. Governor Kimberly Driscoll, this letter was more than ink on paper. It was a symbol of gratitude, encouragement, and addirmation--not just for me, but every young person (especially for immigrants) who dares to believe their voice matters.
I want to share not only what the letter said, but also wht it means to me and how it connects to my journey at Tufts, in advocacy, and in life.
April 2023
Anand Patil, A'26; Itamar Oelsner, A'25; Jose Armando, E'26; and Max Morningstar, A'23
Tufts University is spending a great deal of time and money on major infrastructure projects around campus, notably the upperclassmen dorm next to Hill Hall, an expanded & renovated gym, renovation of Eaton Hall, updates to Hodgdon Food-On-The-Run, Kindlevan, and more. However, the university has neglected to update one of the most important pieces of infrastructure for students’ day-to-day activities: pedestrian infrastructure; the vital piece of infrastructure that allows every student to get to and from their classes. Currently, there are countless accessibility issues with our pedestrian infrastructure, namely missing curb cuts and tactile strips, which make it extremely challenging for those with visibility and mobility impairments to traverse campus. In addition, there are glaringly unsafe crosswalk and intersection designs such as the crosswalk in the Medford portion of College Avenue outside the Science & Engineering Complex. Dangerous by design, crosswalks like these should never exist on a college campus with so much pedestrian traffic. Lastly, there is a general lack of attention to the quality and look of our sidewalks & pedestrian pathways, specifically on The Green/Academic Quad. This lack of attention to the aesthetics of our walking environment has been shown in studies to negatively affect mental health and reinforce car-centric design. Many other institutions of our caliber have beautiful and consistently maintained pathways throughout their entire campuses, and it is a stark contrast to what we have here at Tufts. This resolution hopes to bring to Administration's attention the numerous flaws in the pedestrian infrastructure so that they can begin to work on easy fixes immediately, and plan for a time in the future where major projects can be undertaken to ameliorate higher-level issues with our current infrastructure at Tufts.
Jessica Goober, A'23; Anthony Davis-Pait, A'23; Ary Wolfe-Herman, A'24; Tyler Pisinski, A'24; Andrew Gumbert, A'24; Morgane Hanley, A'25; Rob Treanor, A'25; Jose Armando, E'26 (Senate Advisor); Krystal Mutebi, A'25
Tufts Currently there is a lack of acknowledgement, support, and community for disabled students at Tufts. Tufts is extremely inaccessible in, but not limited to, physical spaces, classrooms, online environments, housing, dining, transportation, and reasonable accommodations. This community senator seat will be the first step towards providing a voice for disabled students and recognizing disabled students as a marginalized community on campus. By supporting this Resolution, the TCU Senate recognizes the presence of ableism on campus as well as the need to dismantle it.
Department of Biomedical Engineering
Tufts University
4 Colby Street, Medford, Massachusetts 02155
Tufts Gordon Institute & Derby Entrepreneurship Center
Tufts University
177 College Avenue, Medford, Massachusetts 02155
Center for Engineering Education and Outreach
Tufts University
200 Boston Avenue, Medford, Massachusetts 02155